ViMRT: a text-mining tool and search engine for automated virus mutation recognition
Authors
Tong, YuantaoTan, Fanglin
Huang, Honglian
Zhang, Zeyu
Zong, Hui
Xie, Yujia
Huang, Danqi
Cheng, Shiyang
Wei, Ziyi
Fang, Meng
Crabbe, M. James C.
Wang, Ying
Zhang, Xiaoyan
Affiliation
Tongji UniversityShanghai Eastern Hepatobiliary Surgery Hospital
Oxford University
University of Bedfordshire
Shanxi University
Issue Date
2022-11-07Subjects
ViMRTtext-mining
search engine
virus mutation recognition
Subject Categories::G920 Others in Computing Sciences
Metadata
Show full item recordAbstract
Virus mutation is one of the most important research issues which plays a critical role in disease progression and has prompted substantial scientific publications. Mutation extraction from published literature has become an increasingly important task, benefiting many downstream applications such as vaccine design and drug usage. However, most existing approaches have low performances in extracting virus mutation due to both lack of precise virus mutation information and their development based on human gene mutations.Citation
Tong Y, Tan F, Huang H, Zhang Z, Zong H, Xie Y, Huang D, Cheng S, Wei Z, Fang M, Crabbe MJC, Wang Y, Zhang X (2022) 'ViMRT: a text-mining tool and search engine for automated virus mutation recognition', Bioinformatics, 39 (1) btac721Publisher
Oxford University PressJournal
BioinformaticsPubMed ID
36342236PubMed Central ID
PMC9805560Type
ArticleLanguage
enISSN
1367-4803EISSN
1367-4811Sponsors
This work was supported by the National Natural Science Foundation of China [81972914 to X.Y.Z. and 81573023 to X.Y.Z.]; the Fundamental Research Funds for the Central Universities [22120200014 to X.Y.Z.]; and Shanghai ‘Rising Stars of Medical Talent’ Youth Development Program [2019-72 to Y.W.].ae974a485f413a2113503eed53cd6c53
10.1093/bioinformatics/btac721
Scopus Count
Collections
The following license files are associated with this item:
- Creative Commons
Except where otherwise noted, this item's license is described as Green - can archive pre-print and post-print or publisher's version/PDF
Related articles
- Text Mining approaches for automated literature knowledge extraction and representation.
- Authors: Nuzzo A, Mulas F, Gabetta M, Arbustini E, Zupan B, Larizza C, Bellazzi R
- Issue date: 2010
- Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature.
- Authors: Lee K, Wei CH, Lu Z
- Issue date: 2021 May 20
- BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines.
- Authors: Jácome AG, Fdez-Riverola F, Lourenço A
- Issue date: 2016 Jul
- miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases.
- Authors: Gupta S, Ross KE, Tudor CO, Wu CH, Schmidt CJ, Vijay-Shanker K
- Issue date: 2016 Apr 29
- Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
- Authors: Crider K, Williams J, Qi YP, Gutman J, Yeung L, Mai C, Finkelstain J, Mehta S, Pons-Duran C, Menéndez C, Moraleda C, Rogers L, Daniels K, Green P
- Issue date: 2022 Feb 1