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    Calculation of protein domain structural similarity using two-dimensional representations

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    Authors
    Allen, B.C.P.
    Grant, Guy H.
    Richards, W. Graham
    Issue Date
    2003
    
    Metadata
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    Abstract
    By reducing protein structures to two-dimensional representations, it is possible to speed up the alignment of the structures and hence calculate similarity indices faster that using three-dimensional representations. Using amino acid based representations gives much better discrimination between proteins and faster calculations. Taking into account the relative similarity of the amino acids involved allowed improved accuracy at very little time cost.
    Citation
    Allen, B.C.P., Grant, G.H. and Richards, W.G. (2003) 'Calculation of Protein domain structural similarity using two-dimensional representations', Journal of Chemical Information and Modeling, 43(1),pp.134-143.
    Publisher
    American Chemical Society
    Journal
    Journal of Chemical Information and Modeling
    URI
    http://hdl.handle.net/10547/294683
    DOI
    10.1021/ci020275t
    Additional Links
    http://pubs.acs.org/cgi-bin/doilookup/?10.1021/ci020275t
    Type
    Article
    Language
    en
    ISSN
    1549-9596
    ae974a485f413a2113503eed53cd6c53
    10.1021/ci020275t
    Scopus Count
    Collections
    Cell and Cryobiology Research Group

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